四種主要布魯氏菌類群的全球系統發育和進化史
首發時間:2023-04-28
摘要:布魯氏菌病是由布魯氏菌引起的一種嚴重的人畜共患疾病,對全世界的公共衛生構成了重大威脅。盡管不同種類的布魯氏菌在基因組水平上顯示高度遺傳相似性,它們仍然表現出不同的宿主偏好、人畜共患風險和毒力。為了更好地了解這種病原體的遺傳多樣性,我們從公共數據庫中一共篩選出1999個菌株,代表了四個主要布魯氏菌種群的結構,并進行了系統發育分析。我們構建了核心SNP系統發育樹并通過PopPunk軟件對布魯氏菌的種群結構進一步細分。接著使用貝葉斯推斷對布魯氏菌的全球進化和系統地理傳播進行了分析。我們發現其最近的共同祖先可以追溯到大約公元前5565年。這表明,這些全球主要種群布魯氏菌株的遺傳多樣化可能與早期牲畜的馴化和分布有關。此外,伴隨著公元1000年開始的全球化,以及近400年內全球聯系的逐步加強,四種主要類群的布魯氏菌株出現了群體擴展和全球傳播加速并在各自的品系中發生了快速的亞型分化。這為我們深入了解布魯氏菌的進化和傳播提供了重要的參考,有助于制定更好的預防和控制布魯氏菌感染的策略。
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Global phylogeny and evolutionary history of four major Brucella species
Abstract:rucellosis is a serious zoonotic disease caused by Brucella species, posing a significant threat to public health worldwide. Although different Brucella species show high genetic similarity at the genomic level, they still exhibit different host preferences, zoonotic risks, and virulence. To better understand the genetic diversity of this pathogen, we selected a total of 1999 strains representing the four major Brucella species from public databases, and performed phylogenetic analysis based on whole genome sequencing. We constructed the core SNPs based phylogenetic tree and subdivided the Brucella population using the PopPunk software. We then used Bayesian inference to analyze the global evolution and systematic geographic spread of Brucella. We found that their most recent common ancestor could be traced back to approximately 5565 BC, suggesting that the genetic diversification of these major global Brucella lineages may be related to the early domestication and distribution of livestock. In addition, with the globalization since around AD 1000 and the further strengthening of global connections in the past two centuries, the four major Brucella lineages have undergone rapid subtype differentiation and population expansion, accompanied by accelerated global dissemination within their respective lineages. Our study provides important insights into the evolution and transmission of Brucella, which can aid in the development of better prevention and control strategies against Brucella .
Keywords: Brucella phylpgeny temporal evolution geographic dissemination
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四種主要布魯氏菌類群的全球系統發育和進化史
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